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Deepak Unni

Posted in Events·
Avatar of Deepak UnniDeepak Unni
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Call for Abstracts: BOSC 2026 Bioinformatics Open Source Conference in Washington, DC, July 14-15

Hi everyone! BOSC 2026, the 27th annual Bioinformatics Open Source Conference, will take place July 14-15 in Washington, DC, as part of the Intelligent Systems for Molecular Biology conference, ISMB 2026. We welcome abstracts on all aspects of open-source bioinformatics and open science. Please note that the deadline to be considered for a talk is April 9, and we cannot grant extensions. Key Dates

  • April 1: Deadline for applying for the Open Bioinformatics Foundation Event Award

  • April 9: Deadline for submitting talk/poster abstracts

  • May 5: Talk/poster acceptance notifications

  • May 7: Late poster submission deadline

  • July 12-16: ISMB 2026

  • July 14-15: BOSC 2026 (part of ISMB)

  • July 16-17 (tentative dates): CollaborationFest (Washington, DC)

We hope to see you (in person or virtually) at BOSC 2026! 🍐

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Posted in Jobs·
Avatar of Deepak UnniDeepak Unni
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Hiring Senior Software Developer with Semantic Web Expertise at SIB Swiss Institute of Bioinformatics in Basel

Hi All! 📢 We’re hiring: Senior Software Developer (permanent, 80–100%) at SIB Swiss Institute of Bioinformatics 📍 Basel (hybrid work possible) To strengthen its semantic layer, Swiss Personalized Health Network (SPHN) is seeking a Senior Software Developer with strong expertise in Semantic Web technologies, particularly SPARQL, and a solid understanding of data pipeline infrastructures and architectures. The successful candidate will contribute to the design and implementation of solutions that put semantic interoperability into practice across the Swiss health data ecosystem. Responsibilities/Tasks

  • Contribute to the design and implementation of ontologies, data models, and APIs supporting semantic interoperability of health data.

  • Develop and maintain semantic data services, with a focus on SPARQL query optimization and integration with RDF triple stores (e.g., GraphDB, Virtuoso).

  • Build tools and workflows that support the alignment of health datasets with international medical informatics standards (FHIR, SNOMED CT, LOINC, HealthDCAT).

  • Collaborate with clinicians, researchers, and IT specialists to translate semantic interoperability requirements into robust technical solutions.

  • Lead the development and on-premises implementation of ETLs and software such as the SPHN Connector and Einstein, enabling secure and standardized data exploration across Switzerland.

📄 Details & contact: https://apply.refline.ch/499599/0353/pub/1/index.html 📬 Apply by 09 March 2026 We look forward to hearing from you! 🚀

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Posted in Events·
Avatar of Deepak UnniDeepak Unni
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Join Us for BOSC 2025: Bioinformatics and Open Science Event

We invite you to join us for BOSC 2025, a vibrant gathering at the forefront of open-source bioinformatics and open science! Location: Liverpool, UK, and virtual Dates: July 21-22, 2025 Website: https://www.open-bio.org/events/bosc/ LinkedIn: https://www.linkedin.com/groups/14344023/ Bluesky: https://bsky.app/profile/bosc.bsky.social Slack: https://join.slack.com/t/obf-bosc/shared_invite/zt-n5ur1gsj-z2C~69_4lYTFPg5tbWA8Ew Key Dates

  • April 17: Deadline for submitting talk/poster abstracts

  • May 13: Talk/poster acceptance notifications

  • May 15: Late poster submission deadline

  • July 20-24: ISMB/ECCB 2025

  • July 21-22: BOSC 2025 (the first two full days of ISMB/ECCB 2025)

  • July 23-24: ISMB CollaborationFest

About BOSC Since 2000, BOSC has provided a forum for sharing ideas and results in open-source bioinformatics and open science. Our annual two-day program includes keynote talks, talks chosen from submitted abstracts, posters, a panel discussion, and more! Exciting news for 2025: BOSC will include a joint session with the newly renamed Bio-Ontologies and Knowledge Representation COSI! Plus, our popular collaborative work event (CollaborationFest, or CoFest) will be held as part of ISMB, with participation open to all. Don’t miss this great opportunity to connect with fellow researchers, contribute to groundbreaking projects, and shape the future of bioinformatics!

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Posted in Events·
Avatar of Deepak UnniDeepak Unni
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Biocuration 2023 Registration Open & Abstract Deadline Extended

Hi All! I’d like to follow up on a previous post regarding Biocuration 2023: The registration for the 16th Annual International Biocuration Conference (Biocuration 2023) is now open. And the deadline for Abstract submission has been extended to Jan 3, 2023. Take a look at https://biocuration2023.github.io for more information regarding registration, topics for abstract submission, and upcoming deadlines.

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Posted in Events·
Avatar of Deepak UnniDeepak Unni
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Upcoming Biocuration 2023 Conference in Padua, Italy

Hi All! It has been a great experience to be part of the KGC community and I’d like to use this opportunity to communicate about an upcoming conference which may be of interest for many in this community. We’re pleased to announce the 16th Annual International Biocuration Conference (Biocuration 2023) will be held in Padua, Italy from April 24-26, 2023. The conference provides a forum for curators, developers, and users of clinical and life sciences data, knowledge, and models to discuss their work, promote collaboration, and foster the community around this active and growing area of research. The call for Abstract submission is open and the deadline is Dec 23. We invite authors to submit abstracts for oral or poster presentations at Biocuration 2023 that highlight their recent work in either biocuration or more broadly curation in the life, natural, or computational sciences. Submissions can span disciplines such as the generation of curated resources (e.g., databases, ontologies), the development of methods (e.g., natural language processing, machine learning-based analyses), the philosophy of curation, and ultimately the applications and analyses relying on curated resources. More information at https://biocuration2023.github.io

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Posted in Ask·
Avatar of Deepak UnniDeepak Unni
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Fantastic! Thank you @KGC U. for clarifying and providing the link 🎉

Fantastic! Thank you KGC U. for clarifying and providing the link 🎉

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Posted in Ask·
Avatar of Deepak UnniDeepak Unni
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Request for Knowledge Graph Conference Recording Availability

Hi All! I couldn't attend the Knowledge Graph Conference this year. Would it be possible to view the recording? Are they available on YouTube or on https://www.knowledgegraph.tech/?

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Commented on Join Tomorrow's Coffee Chat on Knowledge Graphs in...·Posted inShare
Avatar of Deepak Unni
Deepak Unni
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Very useful! Looking forward to the chat 😄

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Commented on New Weekly Virtual Coffee Chats Schedule·Posted inEvents
Avatar of Deepak Unni
Deepak Unni
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That’s 7 am PDT. Going to have to brew a strong cup of coffee 😄

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Commented on Update on National Virtual Biotechnology Laborator...·Posted inAsk
Avatar of Deepak Unni
Deepak Unni
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Awesome! I’ll be sure to vote on the poll

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